Toil Documentation — Toil 5.13.0a1 documentation
Toil Documentation¶ Toil is an open-source pure-Python workflow engine that lets people write better pipelines. Check out our website for a comprehensive list of Toil’s features and read our paper to learn what Toil can do in the real world. Please subscribe to our low-volume announce mailing list and feel free to also join us on GitHub and Gitter. If using Toil for your research, please cite Vivi
PythonとLuigiによるデータパイプライン構築 - Qiita
はじめに この記事は Building Data Pipelines with Python and Luigi の和訳です。 元記事がよくできていたので、自分の理解も兼ねて、拙いながらも訳してみました。 誤り等ありましたらぜひコメントでご指摘おねがいいたします。 データサイエンティストにとって、日々の業務はエンジニアリングというよりも研究開発の色が濃いことがしばしばある。にもかかわらず、プロトタイプから製品までのプロセスには、素早く泥臭い決定が次善の策1であり、けっこうな数のリエンジニアリングの努力が必要となる。これはいつも革新を遅らせ、一般的に言えば、プロジェクト全体を遅らせる。 この記事はデータパイプライン構築の経験について議論する：データの抽出、洗浄、結合、前処理などデータ駆動製品のためのデータを準備するのに必要となる一般的なすべてのステップである。特に焦点を当てるのはデータの配管
A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs - Nature Protocols
Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.
PipelineWorkflows_BioinfoGATK < CCB < TWiki
Bioinformatics/Genomics Pipeline Workflows: Step II Analysis: Data Quality Control and Cleaning using GATK and SAMtools Workflows Overview This page contains a description of the second stage of the genomics data analysis protocol designed and implemented by Federica Torri, Fabio Macciardi and IvoDinov to process large number of sequence data outputted by the Illumina sequencing pipeline. See th
PipelineCommands – bbmri
Below is the current GoNL pipeline commands along with rough execution times when available on the cluster as of January 25th 2011: This analysis pipeline consists of two parts. The first one is based on lane analysis. Afterwards lanes are merged and analysis per lane is conducted. Lane analysis L1. Fastq to check read quality /tools/FastQC/fastqc /data/filename_1.fq.gz \ -Dfastqc.output_dir=/outp
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spotify/luigi · GitHub -- Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.
Luigi PyData presentation
Whole Exome Sequencing Analysis Pipeline - Mood Disorders Analytical Wiki